2024

• Tran, A., Wang, A., Mickaill, J., Strbenac, D., Larance, M., Vernon, S., Grieve, S., Figtree, G., Patrick, E., Yang, J. (2024). Construction and optimization of multi-platform precision pathways for precision medicine. Scientific Reports, 14(Article 4248), 1-11.

2023

• Gupta, R., Strbenac, D., Satgunaseelan, L., Cheung, V., Narayanappa, H., Ashford, B., Mitchell, J., Thind, A., Palme, C., Ch'ng, S., Low, T., Willet, C., Chew, T., Yang, J., Clark, J., et al (2023). Comparing Genomic Landscapes of Oral and Cutaneous Squamous Cell Carcinoma of the Head and Neck: Quest for Novel Diagnostic Markers. Modern Pathology, 36(8), 100190. [More Information]
• Pavan, C., Kirik, D., Parish, C., Thompson, L., Ovchinnikov, D., Jin, J., Jong, S., Strbenac, D., Davis, R., M Sue, C., Halliday, G., et al (2023). Generation of the iPSC line FINi002-A from a male Parkinson's disease patient carrying compound heterozygous mutations in the PRKN gene. Stem Cell Research, 73, 103211-1-103211-6. [More Information]

2022

• Wang, K., Pupo, G., Tembe, V., Patrick, E., Strbenac, D., Schramm, S., Thompson, J., Scolyer, R., Mueller, S., Tarr, G., Mann, G., Yang, J. (2022). Cross-Platform Omics Prediction procedure: a statistical machine learning framework for wider implementation of precision medicine. npj Digital Medicine, 5(1), 85-1-85-10. [More Information]
• Satgunaseelan, L., Strbenac, D., Tadi, S., Nguyen, K., Wykes, J., Palme, C., Low, T., Yang, J., Clark, J., Gupta, R. (2022). Viral Integration Plays a Minor Role in the Development and Prognostication of Oral Squamous Cell Carcinoma. Cancers, 14(21), 5213-1-5213-16. [More Information]
• Thind, A., Ashford, B., Strbenac, D., Mitchell, J., Lee, J., Mueller, S., Minaei, E., Perry, J., Ch'ng, S., Iyer, N., Clark, J., et al (2022). Whole genome analysis reveals the genomic complexity in metastatic cutaneous squamous cell carcinoma. Frontiers in Oncology, 12. [More Information]
• Satgunaseelan, L., Strbenac, D., Willet, C., Chew, T., Sadsad, R., Wykes, J., Low, T., Cooper, W., Lee, C., Palme, C., Yang, J., Clark, J., Gupta, R. (2022). Whole genome duplication in oral squamous cell carcinoma in patients younger than 50 years: implications for prognosis and adverse clinicopathological factors. Genes Chromosomes and Cancer, 61(9), 561-571. [More Information]

2021

• Francis, D., Ghazanfar, S., Havula, E., Krycer, J., Strbenac, D., Senior, A., Minard, A., Geddes, T., Nelson, M., Weiss, F., Stoeckli, J., Yang, J., James, D. (2021). Genome-wide analysis in Drosophila reveals diet-by-gene interactions and uncovers diet-responsive genes. G3: Genes, Genomes, Genetics, 11(10), jkab171. [More Information]
• Satgunaseelan, L., Porazinski, S., Strbenac, D., Istadi, A., Willet, C., Chew, T., Sadsad, R., Palme, C., Lee, J., Boyer, M., Yang, J., Clark, J., Gupta, R., et al (2021). Oral Squamous Cell Carcinoma in Young Patients Show Higher Rates of EGFR Amplification: Implications for Novel Personalized Therapy. Frontiers in Oncology, 11, 750852. [More Information]
• Byrne, M., Koop, D., Strbenac, D., Cisternas, P., Yang, J., Davidson, P., Wray, G. (2021). Transcriptomic analysis of Nodal-and BMP-associated genes during development to the juvenile seastar in Parvulastra exigua (Asterinidae). Marine Genomics, 59, 100857. [More Information]

2020

• Lee, J., Shklovskaya, E., Lim, S., Carlino, M., Menzies, A., Stewart, A., Pedersen, B., Irvine, M., Alavi, S., Yang, J., Strbenac, D., Saw, R., Thompson, J., Wilmott, J., Scolyer, R., Long, G., et al (2020). Transcriptional downregulation of MHC class I and melanoma de- differentiation in resistance to PD-1 inhibition. Nature Communications, 11(1), 1-12. [More Information]
• Byrne, M., Koop, D., Strbenac, D., Cisternas, P., Balogh, R., Yang, J., Davidson, P., Wray, G. (2020). Transcriptomic analysis of sea star development through metamorphosis to the highly derived pentameral body plan with a focus on neural transcription factors. DNA Research, 27(1), dsaa007. [More Information]

2019

• Diefenbach, R., Lee, J., Strbenac, D., Yang, J., Menzies, A., Carlino, M., Long, G., Spillane, A., Stretch, J., Saw, R., Thompson, J., Ch'ng, S., Scolyer, R., Kefford, R., Rizos, H. (2019). Analysis of the whole-exome sequencing of tumor and circulating tumor DNA in metastatic melanoma. Cancers, 11(12), 1-14. [More Information]
• Ghazanfar, S., Strbenac, D., Ormerod, J., Yang, J., Patrick, E. (2019). DCARS: differential correlation across ranked samples. Bioinformatics, 35(5), 823-829. [More Information]
• Lin, Y., Ghazanfar, S., Strbenac, D., Wang, A., Patrick, E., Lin, D., Speed, T., Yang, J., Yang, P. (2019). Evaluating stably expressed genes in single cells. GigaScience, 8(9), 1-10. [More Information]
• Strbenac, D., Wang, K., Wang, X., Dong, J., Mann, G., Mueller, S., Yang, J. (2019). Melanoma Explorer: a web application to allow easy reanalysis of publicly available and clinically annotated melanoma omics data sets. Melanoma Research, 29(3), 342-344. [More Information]

2017

• Koop, D., Cisternas, P., Morris, V., Strbenac, D., Yang, J., Wray, G., Byrne, M. (2017). Nodal and BMP expression during the transition to pentamery in the sea urchin Heliocidaris erythrogramma: insights into patterning the enigmatic echinoderm body plan. BMC Developmental Biology, 17, 1-13. [More Information]
• Strbenac, D. (2017). Novel Preprocessing Approaches for Omics Data Types and Their Performancea Evaluation. Bulletin of the Australian Mathematical Society, 96(2), 348-349. [More Information]
• Strbenac, D., Zhong, L., Raftery, M., Wang, P., Wilson, S., Armstrong, N., Yang, J. (2017). Quantitative Performance Evaluator for Proteomics (QPEP): Web-based Application for Reproducible Evaluation of Proteomics Preprocessing Methods. Journal of Proteome Research, 16(7), 2359-2369. [More Information]

2016

• Strbenac, D., Mann, G., Yang, J., Ormerod, J. (2016). Differential distribution improves gene selection stability and has competitive classification performance for patient survival. Nucleic Acids Research, 44(13), 1-13. [More Information]
• Madore, J., Strbenac, D., Vilain, R., Menzies, A., Yang, J., Thompson, J., Long, G., Mann, G., Scolyer, R., Wilmott, J. (2016). PD-L1 Negative Status is Associated with Lower Mutation Burden, Differential Expression of Immune-Related Genes, and Worse Survival in Stage III Melanoma. Clinical Cancer Research, 22(15), 3915-3923. [More Information]

2015

• Strbenac, D., Mann, G., Ormerod, J., Yang, J. (2015). ClassifyR: an R package for performance assessment of classification with applications to transcriptomics. Bioinformatics, 31(11), 1851-1853. [More Information]
• Heinemann, A., Cullinane, C., De Paoli-Iseppi, R., Wilmott, J., Gunatilake, D., Madore, J., Strbenac, D., Yang, J., Gowrishankar, K., Tiffen, J., Hersey, P., Gallagher, S., et al (2015). Combining BET and HDAC inhibitors synergistically induces apoptosis of melanoma and suppresses AKT and YAP signaling. Oncotarget, 6(25), 21507-21521. [More Information]
• Tiffen, J., Gunatilake, D., Gallagher, S., Gowrishankar, K., Heinemann, A., Cullinane, C., Dutton-Regester, K., Pupo, G., Strbenac, D., Yang, J., Madore, J., Mann, G., Hersey, P., et al (2015). Targeting activating mutations of EZH2 leads to potent cell growth inhibition in human melanoma by derepression of tumor suppressor genes. Oncotarget, 6(29), 27023-27036. [More Information]
• Byrne, M., Koop, D., Cisternas, P., Strbenac, D., Yang, J., Wray, G. (2015). Transcriptomic analysis of Nodal- and BMP-associated genes during juvenile development of the sea urchin Heliocidaris erythrogramma. Marine Genomics, 24(1), 41-45. [More Information]
• Baker, E., Taylor, S., Gupte, A., Chalk, A., Bhattacharya, S., Green, A., Martin, T., Strbenac, D., Robinson, M., Purton, L., et al (2015). Wnt inhibitory factor 1 (WIF1) is a marker of osteoblastic differentiation stage and is not silenced by DNA methylation in osteosarcoma. Bone, 73, 223-232. [More Information]

2013

• Strbenac, D., Armstrong, N., Yang, J. (2013). Correction: Detection and classification of peaks in 5' cap RNA sequencing data. BMC Genetics, 14(1), Art. 767-1. [More Information]
• Strbenac, D., Armstrong, N., Yang, J. (2013). Detection and classification of peaks in 5' cap RNA sequencing data. BMC Genomics, 14(Suppl 5), 1-11. [More Information]
• Bert, S., Robinson, M., Strbenac, D., Statham, A., Song, J., Hulf, T., Sutherland, R., Coolen, M., Stirzaker, C., Clark, S. (2013). Regional Activation of the Cancer Genome by Long-Range Epigenetic Remodeling. Cancer Cell, 23(1), 9-22. [More Information]